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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.243.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
A.2.5.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.2.5.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.450EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.450EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.336EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.336EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.400.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.400.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.537EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.537EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.548EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.548EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.24.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.24.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.492EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.492EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.188EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.188EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.39EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.39EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.50EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-21683South Korea
B.50EWon-ECACACAATCGATGCGCAGTA20502636526346R-1935.15South Korea
B.1.494EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.494EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.167EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.167EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.267EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.267EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.485EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.485EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.119EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.119EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.276EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.276EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.111EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.111EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.27EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.27EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.19EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.19EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.23EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.23EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.506EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.506EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.6.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.438.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.438.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.27EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used