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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.362EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.1.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.1.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.2.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
GK.2.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FW.1.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FW.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HN.3.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
HN.3.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.2.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.2.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.312EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.312EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.13.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.13.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.220EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.220EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.142EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.142EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.523EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.523EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.346EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.346EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.93EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.93EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.512EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.512EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.349EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-19758.7South Korea
B.1.1.349EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.265EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.265EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.38EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.38EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EG.2.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
EG.2.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
DN.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
DN.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HK.3.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
HK.3.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.4.1.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.4.1.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BW.1.1.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BW.1.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.1.1.17EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.1.1.17EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BS.1.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BS.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CM.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
CM.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.75.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used