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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.512NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.349NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.265NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19749.2South Korea
B.1.401NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.362NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FW.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BS.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.75.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CA.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.453NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.637.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.79NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BG.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KN.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.37NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XASNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BL.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.53 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.599NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19777.6South Korea
B.1.1.128NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.451NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.313NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.402NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.609NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.344NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.556NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.245NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.403NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.636NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.126NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.47NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDQ.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
JD.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used