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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.36.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.258NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.426NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.399NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.337NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.539NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.54NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.164NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.392NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.377NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.5.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BB.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.6.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HF.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.9.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDBNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GM.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.44NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FU.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.22.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FE.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBL.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.56NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.49NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
XCMNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.42.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used