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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.208NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.125.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.78 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.159NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.43.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.6.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FP.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.423NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.550NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.261NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.3.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EP.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.15.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCBNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.15.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.8.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XSNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.4.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
XBB.1.5.74NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.6.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.238NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.68NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BR.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.51NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.11.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CA.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.46NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CU.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CA.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.83NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.177.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.2.4 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.161NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used