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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.264.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.501NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.226NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.546NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.194NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21584South Korea
B.1.429.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1.9 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.25.1.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.203NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.157NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.176NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.3.4 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.391NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.393NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.432NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.388NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.48NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.112NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.274NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.515NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.258.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.370NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.118NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.137NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.309NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.632NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.72NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.108NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.332NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAANWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.50NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.36NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.38.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N/ANWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.50NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.494NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.167NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.267NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.165NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.554NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.243.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.2.5.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.450NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.130NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.444NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
AW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.268NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used