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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BZ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.10.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.44SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.4.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.5.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CN.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.4.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.54SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.52SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.11.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JQ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.10.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CC.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CK.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAY.2.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CP.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.5.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.41SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.75.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used