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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.324SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.525SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.480SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.214SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.304SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.214.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.577SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.639SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.5.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AZ.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.270SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.227SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
U.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.28SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.236SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.153SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.302SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.194SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.55SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.51SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.308SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.138SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.379SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.240SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.240.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.121.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.46SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.44SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KC.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KL.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HC.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.507SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.54SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.196SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.459SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.117SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.381SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.237SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.382SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.395SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.61SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used