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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.35 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.122 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.7 (Alpha)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.120.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.119.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GS.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.1.5.93SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.2.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.5.1.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GM.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
FL.13.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
BN.1.2.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GJ.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
EG.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.14.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.3.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DY.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HH.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
EM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FD.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GF.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.3.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.15.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.15.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.36 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
BA.1.1.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used