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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.26 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.103 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.18.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
MB.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LF.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
MD.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LP.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.29.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.2.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.24.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.18.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
MG.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.59SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LG.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.2.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LK.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LB.1.7.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.2.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.25 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.25.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.25.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.75 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.100 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.44 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.2.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LD.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KW.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KR.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.15.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.50.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LB.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LF.3.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.18.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XDK.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.4.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JQ.2.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.23.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DY.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.2.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used