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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.161SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.58SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.75SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.411SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.217SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.17 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.41SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.527SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
C.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.500SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.147SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.487SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.68SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.121SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AS.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-19106.5South Korea
B.1.1.115SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.127.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.88SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.422SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.56SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.198SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.366SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.441SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.416SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.63SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.263SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.135SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FK.1.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DR.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.219SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.208SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.125.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.78 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.159SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.5 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XBC.1.6.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
FP.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BA.2.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.443SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used