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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.67SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.190SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.120SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AM.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.249SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.505SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.74SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.406SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.115SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.133SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.466SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.489SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.363SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.95SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.531SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.200SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.299SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-20316.5South Korea
B.1.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.149SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.300SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.179SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.125SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
G.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.438SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.178SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.208SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.197SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.491SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.8 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.75.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FR.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBJ.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used