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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.403SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.190SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.552SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.89SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
M.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.333SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.429SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.463SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
U.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.373SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.80SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.433SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.36.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.242SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.449SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.152SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.146SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
D.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.81SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.445SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.21 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.123SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.143SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.6.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.112.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.360SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.347SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.195SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.321SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.379SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.78SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.231SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used