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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.104SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.225SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.309SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.105SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.177.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.307SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.171SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.67SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.279SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.67SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.201SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HD.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DJ.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used