Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FL.39.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.73 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.60 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.124.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XYSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GP.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
V.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.149SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.413SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.9.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.107SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.10 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.41 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.142SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.166SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.11 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.34.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.250SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.130SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.469SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.311SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.93SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used