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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.262SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351.5 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
FL.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JB.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.30.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.68SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.80 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.8 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.128 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.220SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.438SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.257SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.323SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.105 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.9 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.398SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.94 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.164SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.275SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.81SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.419SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.151SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used