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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XAY.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.256SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.248SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.559SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.406SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ER.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.640SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AY.43.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.9 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.3 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.16.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.372SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.425SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.144SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used