Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.26.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.56 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.91.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.14 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.359SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.66SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.485SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.73SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.112.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.8 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.440SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.23.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.104 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.198SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
P.1.17.1 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.375SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.626SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.629SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.61 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.75.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.524SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.15.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.59 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBRSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DJ.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.193SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used