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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.220SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.142SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.523SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.36.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.418SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.389SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-20215.9South Korea
B.1.177.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.363SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-17934.7South Korea
B.1.405SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.282SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.228SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.174SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.88 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.106 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.346SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.93SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EF.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CA.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.61SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ED.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BU.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DT.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
DT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCASWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GN.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.77 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.53 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.599SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.128SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used