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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
A.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.91SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.55.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LQ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDKSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.120 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.93SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
HK.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GM.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.13.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.14.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
FL.4.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used