Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.390SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.319SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BG.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.572SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.397SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.3 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.523SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.116 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.38 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.340SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.437SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.452SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.400SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.16 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.37 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.336SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.317SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.397SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
DR.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.5.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CA.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ED.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
BQ.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.56SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used