Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XEBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.263SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.180SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.464SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.234SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.231SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.243SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.517SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.291SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.349SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.314SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.132SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HE.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.27.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XESWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.31.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.78SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HR.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HS.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HU.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.86 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.7 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.12 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used