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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.164SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.392SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.377SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.22.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HW.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.72SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FE.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCMSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.42.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.20.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.13.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCRSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.86SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used