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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.329SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.396SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.311SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.369SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.367SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.240SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.529 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.41.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.33 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.14.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.14.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.17.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AY.99.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KB.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.39.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.58.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.7.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.16.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDDSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.2 (Zeta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.499SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used