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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.283EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BE.12EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.96EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
L.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.310EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.185EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.258.9EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.329EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.229EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.342EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.90EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.169EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.53EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.528EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.175EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.483EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.181EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.113EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.594EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.328EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.13EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.145EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.547EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.247EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.205EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.110EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.434EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.181EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.37EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.22EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.2.21EWon-ECACACAATCGATGCGCAGTA20502636526346R-463.749South Korea
BA.5.2.22EWon-ECACACAATCGATGCGCAGTA20502636526346R-463.749South Korea
BF.10EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.38EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.38.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BT.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.2.55EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.76EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.1.30EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BE.11EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.2.9EWon-ECACACAATCGATGCGCAGTA20502636526346R-463.749South Korea
BF.31EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.4.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.24EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used