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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.1.36NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EF.1.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.32NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EK.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.6.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DV.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.23.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.64NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.68NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.65 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.466NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
L.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.339NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.229NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.415NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.370NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.421NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.428.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.612NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.305NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.1.2.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GK.1.11.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-2619.71Germany
FL.32.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GA.8.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.34NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.512NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.349NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.265NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.401NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.362NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.1.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GK.2.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FW.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HN.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.1.1.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BS.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CM.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.75.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CA.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.453NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.637.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.79NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BG.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.3.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
KN.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.1.61NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.5.2.37NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.5.2.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XASNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used