Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.71NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AS.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.142NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.166NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.4.11 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.34.2 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.50NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.60NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.52NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
W.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.250NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.63NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.27NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.23NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.130NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.44NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.469NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.19NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.311NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.93NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.104NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.225NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
A.2.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AV.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.309NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.105NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.1.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.11NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.307NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.171NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.16NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.57NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.67NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.279NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.67NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.1.12NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.1.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AD.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.201NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
W.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GK.2.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.20NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used