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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.334NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.359NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.302NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.222NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.434NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.467NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.110.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.23 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.9 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.74 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.35NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAY.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CP.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.45NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.5.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.41NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.75.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CR.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-19060.5South Korea
BT.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.63NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.8.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EC.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XLNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used