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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.25 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.25.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.25.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.75 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.100 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.44 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KW.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.15.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.50.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.3.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDK.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.37NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JQ.2.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.23.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DY.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LE.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MD.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LE.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDQNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.502NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.285NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.582NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.580NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.306NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.280NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.329NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.396NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.595.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.311NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.369NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.367NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.595NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.240NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used