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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.76NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
BA.5.6.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.41NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.5.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.3.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ED.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CQ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.38.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-19060.5South Korea
BF.7.19.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.214NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.284NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.351.3 (Beta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.318NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
R.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.29 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ML.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.283NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used