Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBL.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FR.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.17NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.2.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.18.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.15NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
EG.14NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.14NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.2.3.12NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.23.2.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.21.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
EG.5.1.4NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
EG.5.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
HK.28NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.9NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.42NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.4.10NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
HK.19NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
GR.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
EG.1.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.16.21NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.568NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
P.1.13 (Gamma)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.372NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.634NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
C.37.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.630NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.360NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.578NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.544NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.448NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-19636.2Germany
B.1.425NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.354NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-18273.8Germany
B.1.503NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.31NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.623NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.214.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.588NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.210NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
A.28NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.567NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
C.23NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
C.2.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.541NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-21137.4Germany
B.1.36.24NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.25NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.189NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.563NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.34NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.258NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used