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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.48NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.37NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAY.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.60NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FH.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CJ.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HZ.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.69NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.98NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.71NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HT.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.90NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.18.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.26.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.48NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.16.31NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.16.25NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
GA.5NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.5.37NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XAY.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.16.5NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.5.60NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FH.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
CJ.1.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
FL.7NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
HZ.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.5.69NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.5.98NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used