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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.3.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.4.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.57NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FU.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.57NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.10.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.9.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.76NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.107NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LC.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HZ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.172NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.110NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.320NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.91NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.55.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LQ.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.62NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDKNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.54NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.120 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used