Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.73NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDZNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XEBNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.263NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.180NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.464NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.234NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.231NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.243NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.517NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.291NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.349NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.314NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.132NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.42NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JM.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KK.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.1.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JG.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.27.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XENWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCVNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.31.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.50NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.78NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HR.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HS.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HU.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBVNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.86 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used