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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.293NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.225NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.637NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.39 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.26 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.103 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LE.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MD.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LP.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.29.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.24.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LU.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
LG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LK.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.25 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.25.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.25.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.75 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.100 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.44 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KW.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.15.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.50.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.3.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
KP.3.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.65.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDVNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used