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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.450NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.334NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.589NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.335NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.169NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.42NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AE.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.442NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.75NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.106NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
D.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.593NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.438.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.290NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.341NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.161NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.69 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.46NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.139NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.508NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.94NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.463NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.357NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.318NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.557NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.119NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.160NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
D.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.447NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.110.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.180NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.155NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.92NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.145NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.120NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.77NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AE.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.504NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AE.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.201NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.221NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.410NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.411NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.310NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.185NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.329NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.229NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used