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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.269NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.234NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Z.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
V.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.282NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.131NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.274NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.235NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.65NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.45NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.165NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.243NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
R.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.216NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.471NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.420NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
L.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.518NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.551NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.207NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.604NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.111NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.619NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.36.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.36.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.23.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.316NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.436NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.558NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.518NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.368NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.404NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.306NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.328NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.533NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KC.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KL.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HC.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-4273.88South Korea
B.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.507NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.54NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used