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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CL.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EF.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BR.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CP.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.41NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CA.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BS.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CP.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JU.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DE.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.75.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.132 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.83NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDGNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used