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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.396SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.129SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.224SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.618SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.458SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.264.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.75.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FR.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBJ.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.56.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.13.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDLSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.29.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.29.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.2.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.10.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.56SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.338SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BG.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.20.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.38.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used