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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AH.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.289SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.365SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.252SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.223SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.640.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.11 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.428SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.355SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.34.1.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.71 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.33.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.465SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
S.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.215SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.462SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.218SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.74SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EE.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.631SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.627SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.519SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.514SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.87SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAPSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.47.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DJ.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used