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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.39.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.233SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.320SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.635SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.19 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.15 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.113SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.423SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.98.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
HK.34.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.124.1.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.203SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.8.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.254SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.36.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.79 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.1.209SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.236SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.395SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.120.2.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.416.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.532SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.408SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.168SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used