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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.261SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.3.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EP.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.15.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.15.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
FL.4.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.74SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.6.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.238SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.68SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-2756.79South Korea
CA.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
CA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.83SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.161SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
B.1.1.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.75SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.411SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.217SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.17 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.527SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.500SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.147SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used