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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.2.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XASSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.599SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.128SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.451SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.313SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.402SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.609SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.344SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.556SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.245SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.403SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.636SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.126SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDQ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.31.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GN.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FW.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.525SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.480SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.304SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.577SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.639SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.270SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.227SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
U.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used