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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BF.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.5.2.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.132 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.83SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.15.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CR.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KB.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CJ.1.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XANSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
BN.1.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.256SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.248SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.559SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.406SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ER.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.640SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used