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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.621.1 (Mu)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.67SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
CK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
AY.16.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.72SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.73SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDZSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XEBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.263SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.180SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.464SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.234SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.231SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.243SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.517SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.291SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.349SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.314SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.132SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HE.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.27.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XESWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.31.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.78SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HR.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HS.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used