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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
LB.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.3.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JQ.2.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.23.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DY.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LE.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MD.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LE.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.502SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.285SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.582SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.580SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.306SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.280SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.329SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.396SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.311SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.369SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.367SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.240SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.32.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used