Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.62SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.391SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.448SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Q.1 (Alpha)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.46 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.99 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.120.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.322SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.416SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.239SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.375SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.432SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.241SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.298SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.433SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.561SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.605SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.596SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.565SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.361SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.101SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.478SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.86SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.543SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.139SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.221SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.362SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.265SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.585SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.351SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.389SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.549SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.50 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.266SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.253SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.305SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.241SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used