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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.266SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.253SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.305SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.241SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.326SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.255SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.303SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.173SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.362.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.520SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.521SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.383SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.117SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.157SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.187SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.528SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
C.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.91 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.617SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.383SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.95 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.189SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.545SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.482SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.3.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.3.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JC.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.564SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.461SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.486SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.603SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.70SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.606SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.601SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.186SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used