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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.199SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.112SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GN.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.13.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.424SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.64SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.327SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.396SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.129SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.224SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.618SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.458SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.264.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.619.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.12.1 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.260SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.456SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.16 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.177.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.428SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.374SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.63 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.377SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used