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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.350SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.304SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.315SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.516SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.354SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.162SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.426SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.402SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.424SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.61SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.264SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.581SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.330SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.205SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.177SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.301SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.308SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.210SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.325SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.590SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.116SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.496SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.438.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.49 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.497SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EN.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.30 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.85 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.11.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
FY.5.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.2.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.571SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.55 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAMSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.239SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.574SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.355SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used